{ "_id": "6a1ed531b401979e7340e4e1", "Package": "bubbleHeatmap", "Type": "Package", "Title": "Produces 'bubbleHeatmap' Plots for Visualising Metabolomics Data", "Version": "0.1.1", "Authors@R": "c(person(\"Ruth\", \"Boxall\", email = \"ruth.boxall@ndph.ox.ac.uk\",\nrole = c(\"aut\", \"cre\")),\nperson(\"Michael\", \"Holmes\", role = \"ctb\"),\nperson(\"Robin\", \"Walters\", role = \"ctb\"))", "Description": "Plotting package based on the grid system, combining\nelements of a bubble plot and heatmap to conveniently display\ntwo numerical variables, (represented by color and size)\ngrouped by categorical variables on the x and y axes. This is a\nuseful alternative to a forest plot when the data can be\ngrouped in two dimensions, such as predictors x outcomes. It\nhas particular advantages for visualising the metabolic\nmeasures produced by the 'Nightingale Health' metabolomics\nplatform, and templates are included for automatically\ngenerating figures from these datasets.", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.2.3", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-20 10:35:50 UTC", "User": "root" }, "Author": "Ruth Boxall [aut, cre], Michael Holmes [ctb], Robin Walters\n[ctb]", "Maintainer": "Ruth Boxall ", "Repository": "https://ruthckb.r-universe.dev", "Date/Publication": "2023-05-15 13:50:02 UTC", "RemoteUrl": "https://github.com/cran/bubbleHeatmap", "RemoteRef": "HEAD", "RemoteSha": "3ccec49c6cd05a6c151ecf8ff34aee044b4b3d01", "MD5sum": "da3e56206d5f3adbe98a9b6031c36a39", "_user": "ruthckb", "_type": "src", "_file": "bubbleHeatmap_0.1.1.tar.gz", "_fileid": "ed7ac6638289272c337e6b34e48ea1c838038b6bbde1fe273c19af63254b4cd9", "_filesize": 609036, "_sha256": "ed7ac6638289272c337e6b34e48ea1c838038b6bbde1fe273c19af63254b4cd9", "_created": "2026-05-20T10:35:50.000Z", "_published": "2026-06-02T13:05:53.815Z", "_distro": "noble", "_jobs": [ { "job": 79077192154, "time": 113, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7107703933" }, { "job": 79077192076, "time": 110, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7107703302" }, { "job": 79077191867, "time": 112, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7107725373" }, { "job": 79077192098, "time": 86, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7107854623" }, { "job": 79077190027, "time": 163, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7107664781" }, { "job": 79077190555, "time": 102, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7358468668" }, { "job": 79077191853, "time": 74, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7107691043" }, { "job": 79077192806, "time": 79, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7107692418" }, { "job": 79077191938, "time": 102, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7107700212" } ], "_buildurl": "https://github.com/r-universe/ruthckb/actions/runs/26156932697", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/bubbleHeatmap", "_commit": { "id": "3ccec49c6cd05a6c151ecf8ff34aee044b4b3d01", "author": "Ruth Boxall ", "committer": "cran-robot ", "message": "version 0.1.1\n", "time": 1684158602 }, "_maintainer": { "name": "Ruth Boxall", "email": "ruth.boxall@ndph.ox.ac.uk", "login": "ruthckb", "description": "", "uuid": 94367458 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "grid", "role": "Depends" }, { "package": "reshape", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "ruthckb", "count": 2, "uuid": 94367458 } ], "_userbio": { "uuid": 94367458, "type": "user", "name": "RuthCKB" }, "_downloads": { "count": 286, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/bubbleHeatmap" }, "_searchresults": 12, "_rbuild": "4.6.0", "_assets": [ "extra/bubbleHeatmap.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "manual.pdf" ], "_realowner": "ruthckb", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2023-02-17" }, { "version": "0.1.1", "date": "2023-05-15" } ], "_exports": [ "arrangePanels", "bubbleHeatmap", "bubbleHeatmapList", "bubbleHMLegends", "combinePanels", "formatData", "getLayoutSizes", "matchLayoutHeights", "matchLayoutWidths", "merge_template", "metabFigure", "metabFigurePlot", "multiPlotInput" ], "_datasets": [ { "name": "cetp", "title": "Associations of Nightingale Health Metabolomics Panel with a Cholesterol Esterase Transfer Protein Genetic Risk Score in China Kadoorie Biobank", "object": "cetp", "class": [ "data.frame" ], "fields": [ "ckb_id", "estimate", "stdErr", "pval", "negLog10P" ], "rows": 225, "table": true, "tojson": true }, { "name": "ntngale225", "title": "Nightingale Health Metabolomics Plot Template Format", "object": "ntngale225", "class": [ "data.frame" ], "fields": [ "ckb_id", "ukbb_id", "description", "rowName", "colName", "plotGroup" ], "rows": 228, "table": true, "tojson": true }, { "name": "ntngale249", "title": "Nightingale Health Metabolomics Plot Template Format", "object": "ntngale249", "class": [ "data.frame" ], "fields": [ "ckb_id", "ukbb_id", "description", "rowName", "colName", "plotGroup" ], "rows": 249, "table": true, "tojson": true } ], "_help": [ { "page": "arrangePanels", "title": "Arrange Multiple bubbleHeatmap gTrees Inside a New Viewport.", "topics": [ "arrangePanels" ] }, { "page": "bubbleHeatmap", "title": "Generate bubbleHeatmap Plot Object", "concept": [ "build functions" ], "topics": [ "bubbleHeatmap" ] }, { "page": "bubbleHeatmapList", "title": "Output List of bubbleHeatmap Plots.", "concept": [ "build functions" ], "topics": [ "bubbleHeatmapList" ] }, { "page": "bubbleHMLegends", "title": "Build Legend Trees for bubbleHeatmap Plots", "concept": [ "build functions" ], "topics": [ "bubbleHMLegends" ] }, { "page": "cetp", "title": "Associations of Nightingale Health Metabolomics Panel with a Cholesterol Esterase Transfer Protein Genetic Risk Score in China Kadoorie Biobank", "topics": [ "cetp" ] }, { "page": "combinePanels", "title": "Combine Multiple Panels In A New gTree.", "topics": [ "combinePanels" ] }, { "page": "formatData", "title": "Split Data Into Matrices and Reorder Rows and Columns.", "topics": [ "formatData" ] }, { "page": "getLayoutSizes", "title": "Recalculate Layout Sizes for bubbleHeatmap gTree", "topics": [ "getLayoutSizes" ] }, { "page": "matchLayoutHeights", "title": "Match Viewport Layout Dimensions.", "topics": [ "matchLayoutHeights", "matchLayoutWidths" ] }, { "page": "merge_template", "title": "Merge Nightingale Figure Templates with User Data", "topics": [ "merge_template" ] }, { "page": "metabFigure", "title": "Create Nightingale Figure From Template", "topics": [ "metabFigure" ] }, { "page": "metabFigurePlot", "title": "Arrange List of bubbleHeatmap Plots According to Preset Nightingale Template.", "topics": [ "metabFigurePlot" ] }, { "page": "multiPlotInput", "title": "Arrange bubbleHeatmap Arguments in Lists for Building Multiple Plots.", "concept": [ "build functions" ], "topics": [ "multiPlotInput" ] }, { "page": "nightingaleTemplates", "title": "Nightingale Health Metabolomics Plot Template Format", "topics": [ "nightingaleTemplates", "ntngale225", "ntngale249" ] }, { "page": "widthDetails.bubbleHeatmap", "title": "Methods for determining the width/height of bubbleHeatmap plots and legends.", "topics": [ "heightDetails.bubbleHeatmap", "heightDetails.bubbleLegend", "heightDetails.colorLegend", "widthDetails.bubbleHeatmap", "widthDetails.bubbleLegend", "widthDetails.colorLegend" ] } ], "_rundeps": [ "plyr", "Rcpp", "reshape" ], "_vignettes": [ { "source": "Using_Bubbleheatmap.Rmd", "filename": "Using_Bubbleheatmap.html", "title": "Using bubbleHeatmap to Plot Nightingale Metabolomics Data", "engine": "knitr::rmarkdown", "headings": [ "Abstract", "The bubbleHeatmap Plotting Function", "The Nightingale Plot Templates", "Nightingale Metabolomics Platform", "CETP Dataset", "Workflow", "Load Data", "One-step Figure", "Format Data", "Prepare Input for plotting function (multiPlotInput)", "BubbleHeatmapList", "Nightingale Figure Function" ], "created": "2023-02-17 08:30:09", "modified": "2023-05-15 13:50:02", "commits": 2 } ], "_score": 2.079181246047625, "_indexed": true, "_nocasepkg": "bubbleheatmap", "_universes": [ "ruthckb" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.1", "date": "2026-05-20T10:37:42.000Z", "distro": "noble", "commit": "3ccec49c6cd05a6c151ecf8ff34aee044b4b3d01", "fileid": "f54ba0680d0d1ab261f146a8a9dc3ad2e4fee47b93666d472f1fac55c10e301d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ruthckb/actions/runs/26156932697" }, { "r": "4.6.0", "os": "linux", "version": "0.1.1", "date": "2026-05-20T10:37:41.000Z", "distro": "noble", "commit": "3ccec49c6cd05a6c151ecf8ff34aee044b4b3d01", "fileid": "6172a75e2ef332d341080329adf4b8e9efc9ffc30dc0fbb51935d57abdf40894", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ruthckb/actions/runs/26156932697" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1", "date": "2026-05-20T10:38:51.000Z", "commit": "3ccec49c6cd05a6c151ecf8ff34aee044b4b3d01", "fileid": "b23a6028fd247719660fdb52cdba0be4663ba78f2edc88c45c1285a2e7acfb55", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ruthckb/actions/runs/26156932697" }, { "r": "4.6.0", "os": "mac", "version": "0.1.1", "date": "2026-05-20T10:45:28.000Z", "commit": "3ccec49c6cd05a6c151ecf8ff34aee044b4b3d01", "fileid": "d649f1fe0b446798f24d350a0199af0b04acf7accaf3814954171d62f8648fb4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ruthckb/actions/runs/26156932697" }, { "r": "4.7.0", "os": "win", "version": "0.1.1", "date": "2026-05-20T10:37:00.000Z", "commit": "3ccec49c6cd05a6c151ecf8ff34aee044b4b3d01", "fileid": "70555f5881df6445f423ceede838a5ff0de8136bae223e2cdea5e6343eee4c30", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ruthckb/actions/runs/26156932697" }, { "r": "4.5.3", "os": "win", "version": "0.1.1", "date": "2026-05-20T10:37:05.000Z", "commit": "3ccec49c6cd05a6c151ecf8ff34aee044b4b3d01", "fileid": "141a4837d8ccca4a7f1a5f0a1496b0fd55ed2bfe1edc6f5b0f32d3beabeb1e33", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ruthckb/actions/runs/26156932697" }, { "r": "4.6.0", "os": "win", "version": "0.1.1", "date": "2026-05-20T10:37:30.000Z", "commit": "3ccec49c6cd05a6c151ecf8ff34aee044b4b3d01", "fileid": "d3d118b0324664f07fb01508dd6910c653b6c5e2f6d81fdf43b21ca71ddc8365", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ruthckb/actions/runs/26156932697" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.1", "date": "2026-06-02T13:05:13.000Z", "commit": "3ccec49c6cd05a6c151ecf8ff34aee044b4b3d01", "fileid": "5fb283fbefabdeaffd5b78e0ad81dc0b51091448a1b99801d4673f52f5d2084c", "status": "success", "buildurl": "https://github.com/r-universe/ruthckb/actions/runs/26156932697" } ] }